RNA-Seq Analysis in Fruit Science: A Review

Ozhan Simsek; Dicle Donmez; Yildiz Aka Kacar

doi:doi:10.11648/j.ajpb.s.2017020301.11

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RNA-Seq Analysis in Fruit Science: A Review

Ozhan Simsek, Dicle Donmez, Yildiz Aka Kacar

Published in American Journal of Plant Biology (Volume 2, Issue 3-1)

Received: 11 February 2017 Accepted: 14 February 2017 Published: 28 February 2017

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Abstract

Fruit breeding is an ancient technology with dynamic current techniques and an exciting future. There are a number of restraints to conventional fruit breeding which are especially limiting in tree fruits with their long juvenile period, large plant size, and which are represented by unique, highly-selected heterozygous genotypes. Biotechnology offers to minimize disadvantages of classical breeding techniques. In this sense, fruit breeding refers to the purposeful genetic improvement of fruit crops through various techniques including selection, hybridization, mutation induction, and molecular techniques. Among molecular techniques, sequencing technology have been used for many years and recently a new concept titled “RNA-Seq” have been started to performed to understand molecular mechanisms in fruits. RNA-Seq analysis is an effective tool to understand which genes involved and expressed in different mechanisms and organs/cells of a plant. Recently, many articles have been published using RNA-Seq in fruits. In the present review, we illustrated how to apply different RNA-Seq platforms in fruits with examples.

Published in	American Journal of Plant Biology (Volume 2, Issue 3-1) This article belongs to the Special Issue Plant Molecular Biology and Biotechnology
DOI	10.11648/j.ajpb.s.2017020301.11
Page(s)	1-7
Creative Commons	This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.
Copyright	Copyright © The Author(s), 2017. Published by Science Publishing Group

Keywords

Sequencing, Illumina, Gene, Breeding, Fruit

References

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Ozhan Simsek, Dicle Donmez, Yildiz Aka Kacar. (2017). RNA-Seq Analysis in Fruit Science: A Review. American Journal of Plant Biology, 2(3-1), 1-7. https://doi.org/10.11648/j.ajpb.s.2017020301.11

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Ozhan Simsek; Dicle Donmez; Yildiz Aka Kacar. RNA-Seq Analysis in Fruit Science: A Review. Am. J. Plant Biol. 2017, 2(3-1), 1-7. doi: 10.11648/j.ajpb.s.2017020301.11

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AMA Style

Ozhan Simsek, Dicle Donmez, Yildiz Aka Kacar. RNA-Seq Analysis in Fruit Science: A Review. Am J Plant Biol. 2017;2(3-1):1-7. doi: 10.11648/j.ajpb.s.2017020301.11

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@article{10.11648/j.ajpb.s.2017020301.11,
  author = {Ozhan Simsek and Dicle Donmez and Yildiz Aka Kacar},
  title = {RNA-Seq Analysis in Fruit Science: A Review},
  journal = {American Journal of Plant Biology},
  volume = {2},
  number = {3-1},
  pages = {1-7},
  doi = {10.11648/j.ajpb.s.2017020301.11},
  url = {https://doi.org/10.11648/j.ajpb.s.2017020301.11},
  eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ajpb.s.2017020301.11},
  abstract = {Fruit breeding is an ancient technology with dynamic current techniques and an exciting future. There are a number of restraints to conventional fruit breeding which are especially limiting in tree fruits with their long juvenile period, large plant size, and which are represented by unique, highly-selected heterozygous genotypes. Biotechnology offers to minimize disadvantages of classical breeding techniques. In this sense, fruit breeding refers to the purposeful genetic improvement of fruit crops through various techniques including selection, hybridization, mutation induction, and molecular techniques. Among molecular techniques, sequencing technology have been used for many years and recently a new concept titled “RNA-Seq” have been started to performed to understand molecular mechanisms in fruits. RNA-Seq analysis is an effective tool to understand which genes involved and expressed in different mechanisms and organs/cells of a plant. Recently, many articles have been published using RNA-Seq in fruits. In the present review, we illustrated how to apply different RNA-Seq platforms in fruits with examples.},
 year = {2017}
}

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TY  - JOUR
T1  - RNA-Seq Analysis in Fruit Science: A Review
AU  - Ozhan Simsek
AU  - Dicle Donmez
AU  - Yildiz Aka Kacar
Y1  - 2017/02/28
PY  - 2017
N1  - https://doi.org/10.11648/j.ajpb.s.2017020301.11
DO  - 10.11648/j.ajpb.s.2017020301.11
T2  - American Journal of Plant Biology
JF  - American Journal of Plant Biology
JO  - American Journal of Plant Biology
SP  - 1
EP  - 7
PB  - Science Publishing Group
SN  - 2578-8337
UR  - https://doi.org/10.11648/j.ajpb.s.2017020301.11
AB  - Fruit breeding is an ancient technology with dynamic current techniques and an exciting future. There are a number of restraints to conventional fruit breeding which are especially limiting in tree fruits with their long juvenile period, large plant size, and which are represented by unique, highly-selected heterozygous genotypes. Biotechnology offers to minimize disadvantages of classical breeding techniques. In this sense, fruit breeding refers to the purposeful genetic improvement of fruit crops through various techniques including selection, hybridization, mutation induction, and molecular techniques. Among molecular techniques, sequencing technology have been used for many years and recently a new concept titled “RNA-Seq” have been started to performed to understand molecular mechanisms in fruits. RNA-Seq analysis is an effective tool to understand which genes involved and expressed in different mechanisms and organs/cells of a plant. Recently, many articles have been published using RNA-Seq in fruits. In the present review, we illustrated how to apply different RNA-Seq platforms in fruits with examples.
VL  - 2
IS  - 3-1
ER  -

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Author Information

Ozhan Simsek

Faculty of Agriculture, Department of Horticulture, Cukurova University, Adana, Turkey
Dicle Donmez

Institute of Natural and Applied Sciences, Department of Biotechnology, Cukurova University, Adana, Turkey
Yildiz Aka Kacar

Faculty of Agriculture, Department of Horticulture, Cukurova University, Adana, Turkey

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Ozhan Simsek, Dicle Donmez, Yildiz Aka Kacar. (2017). RNA-Seq Analysis in Fruit Science: A Review. American Journal of Plant Biology, 2(3-1), 1-7. https://doi.org/10.11648/j.ajpb.s.2017020301.11

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Ozhan Simsek; Dicle Donmez; Yildiz Aka Kacar. RNA-Seq Analysis in Fruit Science: A Review. Am. J. Plant Biol. 2017, 2(3-1), 1-7. doi: 10.11648/j.ajpb.s.2017020301.11

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AMA Style

Ozhan Simsek, Dicle Donmez, Yildiz Aka Kacar. RNA-Seq Analysis in Fruit Science: A Review. Am J Plant Biol. 2017;2(3-1):1-7. doi: 10.11648/j.ajpb.s.2017020301.11

Copy | Download

@article{10.11648/j.ajpb.s.2017020301.11,
  author = {Ozhan Simsek and Dicle Donmez and Yildiz Aka Kacar},
  title = {RNA-Seq Analysis in Fruit Science: A Review},
  journal = {American Journal of Plant Biology},
  volume = {2},
  number = {3-1},
  pages = {1-7},
  doi = {10.11648/j.ajpb.s.2017020301.11},
  url = {https://doi.org/10.11648/j.ajpb.s.2017020301.11},
  eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ajpb.s.2017020301.11},
  abstract = {Fruit breeding is an ancient technology with dynamic current techniques and an exciting future. There are a number of restraints to conventional fruit breeding which are especially limiting in tree fruits with their long juvenile period, large plant size, and which are represented by unique, highly-selected heterozygous genotypes. Biotechnology offers to minimize disadvantages of classical breeding techniques. In this sense, fruit breeding refers to the purposeful genetic improvement of fruit crops through various techniques including selection, hybridization, mutation induction, and molecular techniques. Among molecular techniques, sequencing technology have been used for many years and recently a new concept titled “RNA-Seq” have been started to performed to understand molecular mechanisms in fruits. RNA-Seq analysis is an effective tool to understand which genes involved and expressed in different mechanisms and organs/cells of a plant. Recently, many articles have been published using RNA-Seq in fruits. In the present review, we illustrated how to apply different RNA-Seq platforms in fruits with examples.},
 year = {2017}
}

Copy | Download

TY  - JOUR
T1  - RNA-Seq Analysis in Fruit Science: A Review
AU  - Ozhan Simsek
AU  - Dicle Donmez
AU  - Yildiz Aka Kacar
Y1  - 2017/02/28
PY  - 2017
N1  - https://doi.org/10.11648/j.ajpb.s.2017020301.11
DO  - 10.11648/j.ajpb.s.2017020301.11
T2  - American Journal of Plant Biology
JF  - American Journal of Plant Biology
JO  - American Journal of Plant Biology
SP  - 1
EP  - 7
PB  - Science Publishing Group
SN  - 2578-8337
UR  - https://doi.org/10.11648/j.ajpb.s.2017020301.11
AB  - Fruit breeding is an ancient technology with dynamic current techniques and an exciting future. There are a number of restraints to conventional fruit breeding which are especially limiting in tree fruits with their long juvenile period, large plant size, and which are represented by unique, highly-selected heterozygous genotypes. Biotechnology offers to minimize disadvantages of classical breeding techniques. In this sense, fruit breeding refers to the purposeful genetic improvement of fruit crops through various techniques including selection, hybridization, mutation induction, and molecular techniques. Among molecular techniques, sequencing technology have been used for many years and recently a new concept titled “RNA-Seq” have been started to performed to understand molecular mechanisms in fruits. RNA-Seq analysis is an effective tool to understand which genes involved and expressed in different mechanisms and organs/cells of a plant. Recently, many articles have been published using RNA-Seq in fruits. In the present review, we illustrated how to apply different RNA-Seq platforms in fruits with examples.
VL  - 2
IS  - 3-1
ER  -

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